Flights from San Diego to San Juan (SAN → SJU)

SAN
San Diego
San Diego International Airport, USA
SJU
San Juan
Luis Munoz Marin International, Puerto Rico
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No direct flights found. Here are the 20 fastest 1-stop options.
viaAustin(AUS)
SAN→AUS+1h 30mAUS→SJU
7h 46m
viaFort Lauderdale(FLL)
SAN→FLL+1h 30mFLL→SJU
7h 46m
viaHouston(HOU)
SAN→HOU+1h 30mHOU→SJU
7h 46m
viaHouston(IAH)
SAN→IAH+1h 30mIAH→SJU
7h 46m
viaMiami(MIA)
SAN→MIA+1h 30mMIA→SJU
7h 46m
viaTampa(TPA)
SAN→TPA+1h 30mTPA→SJU
7h 48m
viaDallas(DFW)
SAN→DFW+1h 30mDFW→SJU
7h 49m
viaOrlando(MCO)
SAN→MCO+1h 30mMCO→SJU
7h 49m
viaJacksonville(JAX)
SAN→JAX+1h 30mJAX→SJU
7h 53m
viaAtlanta(ATL)
SAN→ATL+1h 30mATL→SJU
8h
viaNashville(BNA)
SAN→BNA+1h 30mBNA→SJU
8h 8m
viaCharlotte(CLT)
SAN→CLT+1h 30mCLT→SJU
8h 14m
viaDenver(DEN)
SAN→DEN+1h 30mDEN→SJU
8h 17m
viaSaint Louis(STL)
SAN→STL+1h 30mSTL→SJU
8h 17m
viaRaleigh/Durham(RDU)
SAN→RDU+1h 30mRDU→SJU
8h 22m
viaIndianapolis(IND)
SAN→IND+1h 30mIND→SJU
8h 28m
viaNorfolk(ORF)
SAN→ORF+1h 30mORF→SJU
8h 35m
viaChicago(MDW)
SAN→MDW+1h 30mMDW→SJU
8h 40m
viaChicago(ORD)
SAN→ORD+1h 30mORD→SJU
8h 41m
viaWashington(DCA)
SAN→DCA+1h 30mDCA→SJU
8h 45m
Search all options on Kiwi.com → Total times include an estimated 90-minute layover. Actual times vary by airline and connection.

Frequently asked questions

Are there direct flights from San Diego to San Juan? Currently, there are no direct flights from SAN to SJU. You may need to connect through another airport.

Related guides for this route

Sibling pages from across Flightmaps — fares, visa rules, country aggregations, and per-airline routes for San Diego → San Juan.

Cheap flights from San Diego to San Juan Cheapest month to fly to San Juan Flights from USA Flights to Puerto Rico Visa-free with USA passport All airports in Puerto Rico

Try a nearby airport to San Diego

Flights to San Juan (SJU) from other airports within 350 km of San Diego. Often unlocks cheaper fares or better times.

TIJ → SJU 29 km from SAN Tijuana → San Juan Mexico · 40 destinations SNA → SJU 122 km from SAN Santa Ana → San Juan USA · 48 destinations PSP → SJU 137 km from SAN Palm Springs → San Juan USA · 30 destinations LGB → SJU 149 km from SAN Long Beach → San Juan USA · 18 destinations ONT → SJU 152 km from SAN Ontario → San Juan USA · 31 destinations

Or try a nearby airport to San Juan

Flights from San Diego (SAN) to other airports within 350 km of San Juan.

SAN → STT 110 km from SJU San Diego → Saint Thomas U.S. Virgin Islands · 24 destinations SAN → STX 151 km from SJU San Diego → Saint Croix U.S. Virgin Islands · 8 destinations SAN → EIS 155 km from SJU San Diego → Beef Island British Virgin Islands · 9 destinations SAN → PUJ 249 km from SJU San Diego → Punta Cana Dominican Republic · 75 destinations SAN → LRM 305 km from SJU San Diego → La Romana Dominican Republic · 9 destinations

Other flights from San Diego (SAN)

Albuquerque (ABQ) Amsterdam (AMS) Anchorage (ANC) Atlanta (ATL) Austin (AUS) Baltimore (BWI) Boise (BOI) Boston (BOS) All 87 destinations →

Other flights from San Juan (SJU)

Anguilla (AXA) Atlanta (ATL) Austin (AUS) Baltimore (BWI) Beef Island (EIS) Bogota (BOG) Boston (BOS) Buffalo (BUF) All 59 destinations →